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Proteomics in SyBIT

DATE : July 4th 2012
TIME: 09:15 - 16:15
REGISTRATION OVER List of attendants*
LOCATION: Bern, Chemie und Biochemie Room S 559  .. this is a 10min walk from the station

The theme is proteomics in general. Focus is on software, best practices, experiences, do's and dont's

  • Proteomics tools, software
  • Search engines
  • Quantification tools
  • Databases
  • Automation
  • Statistics, visualization
  • Publication to PRIDE and others
  • Archiving policies of data
  • Standards

Agenda

 

Time

Speaker

Title

Slides

9:00 - 9:15ARRIVAL

 

 

9:15 - 09:30

Peter Kunszt

Intro and usual news

PPT

09:30 - 10:00

Pierre-Alain Binz

ProteomeXchange, Proteomics Standards and Evidence Based Annotation in UniProt

 

10:00 - 10:30

Franz-Josef Elmer

Examples of Proteomics Web Apps for openBIS

PDF and Zipped Demo Material

10:30 - 11:00BREAK

 

 

11:00 - 11:30

Christian Panse

FCC -> (F)GCZ (C)onverter (C)ontrol. about generic controlled processing of instrument files

http://fgcz-data.uzh.ch/public/fcc/

11:30 - 11:45

Simon Barkow

HiFly -> a small tool checking which peptides can 'fly' at all

PDF

11:45 - 12:15

Jonas Grossmann

LFQ -> Label-free quantitation tips & tricks

PDF

12:15 - 13:30LUNCH BREAK

 

 

13:30 - 14:15

Hendrik Weisser

Label-free quantification with OpenMS

 

14:15 - 14:45

Hannes Röst or George Rosenberger

openSWATH

 

14:45 - 15:15BREAK

 

 

15:15 - 15:45

Andreas Quandt

Generating automated workflows

 

15:45 - 16:15

Lorenz Blum & Witold Wolski

iPortal: Portlets & Workflows for proteomics analysis

 

16:15DEPARTURE

 

 

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